Package interface :: Package topology :: Module GenericTopology :: Class T_Periodic
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Class T_Periodic

source code

     object --+        
              |        
GenericTopology --+    
                  |    
       SGT_Periodic --+
                      |
                     T_Periodic

Nested Classes [hide private]
  _s
Instance Methods [hide private]
 
__setattr__(self, name, value)
x.__setattr__('name', value) <==> x.name = value
source code
 
__getattr__(self, name) source code
 
__repr__(self)
repr(x)
source code
 
__init__(self, *args)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
source code
 
__swig_destroy__(...)
 
__del__(self) source code
 
uncacheCellList(self) source code
 
updateCellLists(self, *args) source code
 
getParameters(self, *args) source code
 
getIdNoAlias(self) source code
 
_print(self, positions=None) source code
 
setCellSize(self, *args) source code
 
setBC(self, *args) source code

Inherited from SGT_Periodic: checkMoleculePairDistances, getBoundaryConditionsBox, getBoundingbox, getDefaults, getVolume, minimalDifference, minimalImage, minimalPosition, rescaleVolume

Inherited from GenericTopology: getScope, make, makeSCPISM, setExclusion

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __str__, __subclasshook__

Static Methods [hide private]

Inherited from GenericTopology: getKeyword

Class Variables [hide private]
  __swig_setmethods__ = {'LJScalingFactor': <built-in function G...
  __swig_getmethods__ = {'LJScalingFactor': <built-in function G...

Inherited from GenericTopology: keyword, scope

Properties [hide private]
  cellLists
  cellManager

Inherited from SGT_Periodic: boundaryConditions

Inherited from GenericTopology: LJScalingFactor, angles, atomTypes, atoms, bondRattleShakeConstraints, bonds, coulombScalingFactor, degreesOfFreedom, dihedrals, doSCPISM, exclude, exclusions, forceFieldFlag, iSGNumMols, implicitSolvent, impropers, isgLJParms, lennardJonesParameters, max, min, minimalMolecularDistances, molecules, rb_dihedrals, time

Inherited from object: __class__

Method Details [hide private]

__setattr__(self, name, value)

source code 

x.__setattr__('name', value) <==> x.name = value

Overrides: SGT_Periodic.__setattr__

__getattr__(self, name)
(Qualification operator)

source code 
Overrides: SGT_Periodic.__getattr__

__repr__(self)
(Representation operator)

source code 

repr(x)

Overrides: _swig_repr

__init__(self, *args)
(Constructor)

source code 

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: SGT_Periodic.__init__

__swig_destroy__(...)

 
Overrides: _GenericTopology.delete_SGT_Periodic

__del__(self)
(Destructor)

source code 
Overrides: SGT_Periodic.__del__

uncacheCellList(self)

source code 
Overrides: GenericTopology.uncacheCellList

_print(self, positions=None)

source code 
Overrides: GenericTopology._print

Class Variable Details [hide private]

__swig_setmethods__

Value:
{'LJScalingFactor': <built-in function GenericTopology_LJScalingFactor\
_set>,
 'angles': <built-in function GenericTopology_angles_set>,
 'atomTypes': <built-in function GenericTopology_atomTypes_set>,
 'atoms': <built-in function GenericTopology_atoms_set>,
 'bondRattleShakeConstraints': <built-in function GenericTopology_bond\
RattleShakeConstraints_set>,
 'bonds': <built-in function GenericTopology_bonds_set>,
...

__swig_getmethods__

Value:
{'LJScalingFactor': <built-in function GenericTopology_LJScalingFactor\
_get>,
 'angles': <built-in function GenericTopology_angles_get>,
 'atomTypes': <built-in function GenericTopology_atomTypes_get>,
 'atoms': <built-in function GenericTopology_atoms_get>,
 'bondRattleShakeConstraints': <built-in function GenericTopology_bond\
RattleShakeConstraints_get>,
 'bonds': <built-in function GenericTopology_bonds_get>,
...

Property Details [hide private]

cellLists

Get Method:
_GenericTopology.T_Periodic_cellLists_get(...)
Set Method:
_GenericTopology.T_Periodic_cellLists_set(...)

cellManager

Get Method:
_GenericTopology.T_Periodic_cellManager_get(...)
Set Method:
_GenericTopology.T_Periodic_cellManager_set(...)