Package interface :: Package topology :: Module _GenericTopology
[hide private]
[frames] | no frames]

Module _GenericTopology

Functions [hide private]
 
GenericTopology_LJScalingFactor_get(...)
 
GenericTopology_LJScalingFactor_set(...)
 
GenericTopology__print(...)
 
GenericTopology_angles_get(...)
 
GenericTopology_angles_set(...)
 
GenericTopology_atomTypes_get(...)
 
GenericTopology_atomTypes_set(...)
 
GenericTopology_atoms_get(...)
 
GenericTopology_atoms_set(...)
 
GenericTopology_bondRattleShakeConstraints_get(...)
 
GenericTopology_bondRattleShakeConstraints_set(...)
 
GenericTopology_bonds_get(...)
 
GenericTopology_bonds_set(...)
 
GenericTopology_checkMoleculePairDistances(...)
 
GenericTopology_coulombScalingFactor_get(...)
 
GenericTopology_coulombScalingFactor_set(...)
 
GenericTopology_degreesOfFreedom_get(...)
 
GenericTopology_degreesOfFreedom_set(...)
 
GenericTopology_dihedrals_get(...)
 
GenericTopology_dihedrals_set(...)
 
GenericTopology_doSCPISM_get(...)
 
GenericTopology_doSCPISM_set(...)
 
GenericTopology_exclude_get(...)
 
GenericTopology_exclude_set(...)
 
GenericTopology_exclusions_get(...)
 
GenericTopology_exclusions_set(...)
 
GenericTopology_forceFieldFlag_get(...)
 
GenericTopology_forceFieldFlag_set(...)
 
GenericTopology_getBoundaryConditionsBox(...)
 
GenericTopology_getBoundingbox(...)
 
GenericTopology_getDefaults(...)
 
GenericTopology_getKeyword(...)
 
GenericTopology_getScope(...)
 
GenericTopology_getVolume(...)
 
GenericTopology_iSGNumMols_get(...)
 
GenericTopology_iSGNumMols_set(...)
 
GenericTopology_implicitSolvent_get(...)
 
GenericTopology_implicitSolvent_set(...)
 
GenericTopology_impropers_get(...)
 
GenericTopology_impropers_set(...)
 
GenericTopology_isgLJParms_get(...)
 
GenericTopology_isgLJParms_set(...)
 
GenericTopology_lennardJonesParameters_get(...)
 
GenericTopology_lennardJonesParameters_set(...)
 
GenericTopology_make(...)
 
GenericTopology_makeSCPISM(...)
 
GenericTopology_max_get(...)
 
GenericTopology_max_set(...)
 
GenericTopology_min_get(...)
 
GenericTopology_min_set(...)
 
GenericTopology_minimalDifference(...)
 
GenericTopology_minimalImage(...)
 
GenericTopology_minimalMolecularDistances_get(...)
 
GenericTopology_minimalMolecularDistances_set(...)
 
GenericTopology_minimalPosition(...)
 
GenericTopology_molecules_get(...)
 
GenericTopology_molecules_set(...)
 
GenericTopology_rb_dihedrals_get(...)
 
GenericTopology_rb_dihedrals_set(...)
 
GenericTopology_rescaleVolume(...)
 
GenericTopology_setExclusion(...)
 
GenericTopology_swigregister(...)
 
GenericTopology_time_get(...)
 
GenericTopology_time_set(...)
 
GenericTopology_uncacheCellList(...)
 
RealAbs(...)
 
SGT_Periodic_boundaryConditions_get(...)
 
SGT_Periodic_boundaryConditions_set(...)
 
SGT_Periodic_checkMoleculePairDistances(...)
 
SGT_Periodic_getBoundaryConditionsBox(...)
 
SGT_Periodic_getBoundingbox(...)
 
SGT_Periodic_getDefaults(...)
 
SGT_Periodic_getVolume(...)
 
SGT_Periodic_minimalDifference(...)
 
SGT_Periodic_minimalImage(...)
 
SGT_Periodic_minimalPosition(...)
 
SGT_Periodic_rescaleVolume(...)
 
SGT_Periodic_swigregister(...)
 
SGT_Vacuum_boundaryConditions_get(...)
 
SGT_Vacuum_boundaryConditions_set(...)
 
SGT_Vacuum_checkMoleculePairDistances(...)
 
SGT_Vacuum_getBoundaryConditionsBox(...)
 
SGT_Vacuum_getBoundingbox(...)
 
SGT_Vacuum_getDefaults(...)
 
SGT_Vacuum_getVolume(...)
 
SGT_Vacuum_minimalDifference(...)
 
SGT_Vacuum_minimalImage(...)
 
SGT_Vacuum_minimalPosition(...)
 
SGT_Vacuum_rescaleVolume(...)
 
SGT_Vacuum_swigregister(...)
 
SWIG_PyInstanceMethod_New(...)
 
SwigPyIterator___add__(...)
 
SwigPyIterator___eq__(...)
 
SwigPyIterator___iadd__(...)
 
SwigPyIterator___isub__(...)
 
SwigPyIterator___ne__(...)
 
SwigPyIterator___next__(...)
 
SwigPyIterator___sub__(...)
 
SwigPyIterator_advance(...)
 
SwigPyIterator_copy(...)
 
SwigPyIterator_decr(...)
 
SwigPyIterator_distance(...)
 
SwigPyIterator_equal(...)
 
SwigPyIterator_incr(...)
 
SwigPyIterator_next(...)
 
SwigPyIterator_previous(...)
 
SwigPyIterator_swigregister(...)
 
SwigPyIterator_value(...)
 
T_Periodic__print(...)
 
T_Periodic_cellLists_get(...)
 
T_Periodic_cellLists_set(...)
 
T_Periodic_cellManager_get(...)
 
T_Periodic_cellManager_set(...)
 
T_Periodic_getIdNoAlias(...)
 
T_Periodic_getParameters(...)
 
T_Periodic_setBC(...)
 
T_Periodic_setCellSize(...)
 
T_Periodic_swigregister(...)
 
T_Periodic_uncacheCellList(...)
 
T_Periodic_updateCellLists(...)
 
T_Vacuum__print(...)
 
T_Vacuum_cellLists_get(...)
 
T_Vacuum_cellLists_set(...)
 
T_Vacuum_cellManager_get(...)
 
T_Vacuum_cellManager_set(...)
 
T_Vacuum_getIdNoAlias(...)
 
T_Vacuum_getParameters(...)
 
T_Vacuum_setCellSize(...)
 
T_Vacuum_swigregister(...)
 
T_Vacuum_uncacheCellList(...)
 
T_Vacuum_updateCellLists(...)
 
Vector3DBlock___add__(...)
 
Vector3DBlock___div__(...)
 
Vector3DBlock___iadd__(...)
 
Vector3DBlock___isub__(...)
 
Vector3DBlock___mul__(...)
 
Vector3DBlock___sub__(...)
 
Vector3DBlock_boundingbox(...)
 
Vector3DBlock_c_get(...)
 
Vector3DBlock_c_set(...)
 
Vector3DBlock_clear(...)
 
Vector3DBlock_empty(...)
 
Vector3DBlock_intoAdd(...)
 
Vector3DBlock_intoAssign(...)
 
Vector3DBlock_intoSubtract(...)
 
Vector3DBlock_intoWeighted(...)
 
Vector3DBlock_intoWeightedAdd(...)
 
Vector3DBlock_intoWeightedSubtract(...)
 
Vector3DBlock_push_back(...)
 
Vector3DBlock_resize(...)
 
Vector3DBlock_size(...)
 
Vector3DBlock_sum(...)
 
Vector3DBlock_swap(...)
 
Vector3DBlock_swigregister(...)
 
Vector3DBlock_vec_get(...)
 
Vector3DBlock_vec_set(...)
 
Vector3DBlock_zero(...)
 
buildExclusionTable(...)
 
buildMoleculeTable(...)
 
buildTopology(...)
 
delete_GenericTopology(...)
 
delete_SGT_Periodic(...)
 
delete_SGT_Vacuum(...)
 
delete_SwigPyIterator(...)
 
delete_T_Periodic(...)
 
delete_T_Vacuum(...)
 
delete_Vector3DBlock(...)
 
new_T_Periodic(...)
 
new_T_Vacuum(...)
 
new_Vector3DBlock(...)
Variables [hide private]
  CHARMM = 0
  GBSA = 2
  GROMACS = 1
  NONE = 0
  SCPISM = 1
  __package__ = None
  cvar = <Swig global variables>