Module _GenericTopology


Functions

GenericTopology_LJScalingFactor_get
GenericTopology_LJScalingFactor_set
GenericTopology__print
GenericTopology_angles_get
GenericTopology_angles_set
GenericTopology_atomTypes_get
GenericTopology_atomTypes_set
GenericTopology_atoms_get
GenericTopology_atoms_set
GenericTopology_bondRattleShakeConstraints_get
GenericTopology_bondRattleShakeConstraints_set
GenericTopology_bonds_get
GenericTopology_bonds_set
GenericTopology_checkMoleculePairDistances
GenericTopology_coulombScalingFactor_get
GenericTopology_coulombScalingFactor_set
GenericTopology_degreesOfFreedom_get
GenericTopology_degreesOfFreedom_set
GenericTopology_dihedrals_get
GenericTopology_dihedrals_set
GenericTopology_doSCPISM_get
GenericTopology_doSCPISM_set
GenericTopology_exclude_get
GenericTopology_exclude_set
GenericTopology_exclusions_get
GenericTopology_exclusions_set
GenericTopology_forceFieldFlag_get
GenericTopology_forceFieldFlag_set
GenericTopology_getBoundaryConditionsBox
GenericTopology_getBoundingbox
GenericTopology_getDefaults
GenericTopology_getKeyword
GenericTopology_getScope
GenericTopology_getVolume
GenericTopology_iSGNumMols_get
GenericTopology_iSGNumMols_set
GenericTopology_implicitSolvent_get
GenericTopology_implicitSolvent_set
GenericTopology_impropers_get
GenericTopology_impropers_set
GenericTopology_isgLJParms_get
GenericTopology_isgLJParms_set
GenericTopology_lennardJonesParameters_get
GenericTopology_lennardJonesParameters_set
GenericTopology_make
GenericTopology_makeSCPISM
GenericTopology_max_get
GenericTopology_max_set
GenericTopology_min_get
GenericTopology_min_set
GenericTopology_minimalDifference
GenericTopology_minimalImage
GenericTopology_minimalMolecularDistances_get
GenericTopology_minimalMolecularDistances_set
GenericTopology_minimalPosition
GenericTopology_molecules_get
GenericTopology_molecules_set
GenericTopology_rb_dihedrals_get
GenericTopology_rb_dihedrals_set
GenericTopology_rescaleVolume
GenericTopology_setExclusion
GenericTopology_swigregister
GenericTopology_time_get
GenericTopology_time_set
GenericTopology_uncacheCellList
RealAbs
SGT_Periodic_boundaryConditions_get
SGT_Periodic_boundaryConditions_set
SGT_Periodic_checkMoleculePairDistances
SGT_Periodic_getBoundaryConditionsBox
SGT_Periodic_getBoundingbox
SGT_Periodic_getDefaults
SGT_Periodic_getVolume
SGT_Periodic_minimalDifference
SGT_Periodic_minimalImage
SGT_Periodic_minimalPosition
SGT_Periodic_rescaleVolume
SGT_Periodic_swigregister
SGT_Vacuum_boundaryConditions_get
SGT_Vacuum_boundaryConditions_set
SGT_Vacuum_checkMoleculePairDistances
SGT_Vacuum_getBoundaryConditionsBox
SGT_Vacuum_getBoundingbox
SGT_Vacuum_getDefaults
SGT_Vacuum_getVolume
SGT_Vacuum_minimalDifference
SGT_Vacuum_minimalImage
SGT_Vacuum_minimalPosition
SGT_Vacuum_rescaleVolume
SGT_Vacuum_swigregister
SWIG_PyInstanceMethod_New
SwigPyIterator___add__
SwigPyIterator___eq__
SwigPyIterator___iadd__
SwigPyIterator___isub__
SwigPyIterator___ne__
SwigPyIterator___next__
SwigPyIterator___sub__
SwigPyIterator_advance
SwigPyIterator_copy
SwigPyIterator_decr
SwigPyIterator_distance
SwigPyIterator_equal
SwigPyIterator_incr
SwigPyIterator_next
SwigPyIterator_previous
SwigPyIterator_swigregister
SwigPyIterator_value
T_Periodic__print
T_Periodic_cellLists_get
T_Periodic_cellLists_set
T_Periodic_cellManager_get
T_Periodic_cellManager_set
T_Periodic_getIdNoAlias
T_Periodic_getParameters
T_Periodic_setBC
T_Periodic_setCellSize
T_Periodic_swigregister
T_Periodic_uncacheCellList
T_Periodic_updateCellLists
T_Vacuum__print
T_Vacuum_cellLists_get
T_Vacuum_cellLists_set
T_Vacuum_cellManager_get
T_Vacuum_cellManager_set
T_Vacuum_getIdNoAlias
T_Vacuum_getParameters
T_Vacuum_setCellSize
T_Vacuum_swigregister
T_Vacuum_uncacheCellList
T_Vacuum_updateCellLists
Vector3DBlock___add__
Vector3DBlock___div__
Vector3DBlock___iadd__
Vector3DBlock___isub__
Vector3DBlock___mul__
Vector3DBlock___sub__
Vector3DBlock_boundingbox
Vector3DBlock_c_get
Vector3DBlock_c_set
Vector3DBlock_clear
Vector3DBlock_empty
Vector3DBlock_intoAdd
Vector3DBlock_intoAssign
Vector3DBlock_intoSubtract
Vector3DBlock_intoWeighted
Vector3DBlock_intoWeightedAdd
Vector3DBlock_intoWeightedSubtract
Vector3DBlock_push_back
Vector3DBlock_resize
Vector3DBlock_size
Vector3DBlock_sum
Vector3DBlock_swap
Vector3DBlock_swigregister
Vector3DBlock_vec_get
Vector3DBlock_vec_set
Vector3DBlock_zero
buildExclusionTable
buildMoleculeTable
buildTopology
delete_GenericTopology
delete_SGT_Periodic
delete_SGT_Vacuum
delete_SwigPyIterator
delete_T_Periodic
delete_T_Vacuum
delete_Vector3DBlock
new_T_Periodic
new_T_Vacuum
new_Vector3DBlock

Variables

CHARMM
GBSA
GROMACS
NONE
SCPISM
__package__
cvar

[hide private]